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Harnessing CRISPR to Revolutionize COVID Testing

A gloved hand holds a COVID-19 test.

Professor Pardis Sabeti was able to apply findings from her research on Ebola to now develop a test for detecting COVID-19.

Published March 9, 2021

By Brittany Aguilar, PhD

Pardis Sabeti, MD, DPhil, MSc

This isn’t the first time that Pardis Sabeti, MD, DPhil, MSc, a professor of organismic and evolutionary biology at Harvard University, and newly elected member of the National Academy of Medicine, has worn the hat of viral genome detective in the earliest days of a deadly outbreak or viral disease. Sabeti and her team began sequencing Ebola samples just days after the virus was first detected in Sierra Leone during the 2013-2016 West African outbreak. Since January 2020, she has been working on diagnostics for COVID-19, developing models to predict the most sensitive and accurate assay design candidates for the rapid detection of SARS-CoV-2, including an assay that harnesses the powerful accuracy of CRISPR technology.

Describe the innovative, rapid COVID-19 test that you helped create—how does it work, and why is it an improvement on current testing methods?

Over the last several years, my lab, colleagues, and I have been developing an assortment of technologies for genomic surveillance of pathogens. In particular, we have been deeply invested in CRISPR technologies. CRISPR was first discovered within bacterial immune systems, where it is used to protect the bacteria from invading pathogens by rapidly identifying and targeting a genomic sequence with very high fidelity. Thus, it is immensely powerful as a diagnostic tool, since it can be designed to detect any sequence of genetic material with impressive accuracy.

It is an incredibly exciting technology: it is highly accurate, it would be able to rapidly detect pathogens using little equipment and a simple, paper-strip read-out, and it could be developed in a matter of days to detect newly discovered pathogens or new variants of known pathogens. Crucially, the test is also inexpensive to manufacture, which means it could be easily scaled and distributed as pathogens—or novel variants of pathogens—emerge.

Throughout the duration of the COVID-19 pandemic, some have suggested that testing is optional, unnecessary or unreliable—can you describe why the creation of rapid, reliable tests is so important?  Does that change depending on where we are in the infection curve?

Testing is extremely critical to fighting the spread of any infectious disease, and this has been demonstrated through history. However, testing technology has been achievable but not prioritized—if we had invested in this space after the SARS-CoV epidemic [the SARS outbreak in 2003], I believe we could have been poised to respond to SARS-CoV-2 before it spread throughout the world.

The need for diagnostics is critical everywhere, from pre-empting a pandemic, to response and recovery. To be as useful as possible, diagnostics must also be affordable and accessible to all—this is not just in infectious disease but throughout all medicine. The sooner individuals and communities have information, the better they can respond, enabling better outcomes.

You wrote a book last year entitled “Outbreak Culture.” Are there any key learnings from that book that can be applied to COVID or future pandemics?

In this book we argue that a dysfunctional “outbreak culture”—the collective mindset that develops among responders and communities that emerges in the chaos and crucible that is disease outbreaks—poses a great threat to our ability to curb outbreaks and save lives, and that we must continually watch for and dismantle toxic response systems where possible. This includes the data and resource hoarding, perverse capitalistic incentives, the spread of misinformation, and the loss of empathy and good citizenship.

I think people are still just beginning to understand the gravity of outbreak culture and how it is operating amidst COVID. For example, we all now know the importance of detecting outbreaks, through track-and-trace methods, before they have the chance to spread widely. But what is given less attention is how those efforts can be sidelined or undermined by many surrounding societal and political forces.

I always advocate for a massively increased effort for empathy during outbreaks. We need resilient communities to be able to do the best work against infectious disease. With our trust in our fellow citizens, our leaders, and our scientists undermined during this time, it is crucial to work within the community and low to the ground. We must listen to others, respect their opinions, and understand their fears. For that reason, I believe we must double down on empathy when it comes to community participation. If we do not work with communities and support them in the right ways, we end up causing more harm than good.

About Prof. Sabeti

Pardis Sabeti, MD, DPhil, MSc is a Professor at the Center for Systems Biology and Department of Organismic and Evolutionary Biology at Harvard University and the Department of Immunology and Infectious Disease at the Harvard School of Public Health.  She was a 2016 and 2017 Finalist for the Academy’s Blavatnik National Award for Young Scientists. To learn more about Dr. Sabeti and her work, click here to listen to the “Deciphering Zika” podcast.

Reinventing One of the Planet’s Oldest Materials

A man delivers an address during the symposium.

It was a chance encounter and conversation with a wood researcher that set 2019 and 2020 Blavatnik National Awards for Young Scientists Finalist, Liangbing Hu, PhD, on a path to exploring important problems in sustainable energy, water, and the environment.

Published January 21, 2021

By Marvin Cummings Jr., PhD

Liangbing Hu at the 2019 Blavatnik National Awards for Young Scientists Ceremony at the American Museum of Natural History in New York City.

A physicist by training, Hu is a professor of Materials Science and Engineering at the University of Maryland, College Park, and a self-described “wood nanotechnologist.” He considers himself an outsider and works every day to make wood—one of the oldest biomaterial resources on the planet—a viable solution to some of the most pressing problems in sustainability.

We recently sat down with Professor Hu to discuss his research, the exciting opportunities in front of him in sustainability, his new company, and his philosophy on making a real-world impact through innovation.

What pressing sustainability challenges in energy, water, and the environment are you most focused on addressing in your lab?

My research interests focus on material innovations for energy and sustainability. We are interested in replacing the non-sustainable materials that we use in our everyday life, like plastics and glass, and steel; these materials are widely used but have a huge negative impact on our environment. For example, steel production has a tremendous impact on the environment, our air, and climate, in-part, because of the huge amount of energy needed to produce it.

Specifically, my lab is looking to utilize tiny filaments (nanofibers) found in wood as a potential technological solution to many non-sustainable materials. These nanofibers look almost identical to carbon nanotubes (unique molecules made entirely of carbon and nearly 50,000´ smaller than the diameter of a human hair), but have the unique advantage of being significantly cheaper and more abundant. We want to explore the unique ion transport, optical, and mechanical properties of nanofibers and come up with new solutions to address the current environmental challenges we face.

What exciting types of wood-based nanotechnologies have come out of your lab recently?

Liangbing Hu’s Prototype. Photo Credit: The University of Maryland.

There are three wood technologies that we are excited about in our lab:

Megawatt Batteries: Megawatt batteries are an important application in new battery technology and are needed for grid storage from renewable energy sources, like wind and solar. Our lab is using wood nanofibers as a medium to transport ions, like sodium and magnesium, and to improve the battery’s charge rate. The technology addresses two challenges. One is related to ion transport, the other is mechanical.

The battery needs to be soft, like the cushion in your sofa, so it can expand and shrink during charge and discharge cycles as ions such as magnesium and sodium cycle in and out, causing battery material to shrink and expand. It is like the battery is breathing in a healthy way. Wood nanofibers can potentially provide the mechanical flexibility and ion transport properties needed to make grid storage battery technology a reality.

Transparent paper: We want to replace the widespread use of plastic with transparent paper. We have discovered that by taking regular paper fibers and tearing them apart into nanofibers we can make the paper material 10 or even 100 times stronger. In addition, the fiber diameter is now smaller than the wavelength of visible light, so visible light in‑effect does not see the fiber anymore. The paper becomes transparent, so this material could potentially replace plastics in food packaging.

Water treatment: Water shortages have become a huge issue in many regions around the world. We are working on a process known as desalination, to obtain freshwater from seawater. We have developed a technology that takes advantage of wood’s inherent ability to transport water and also to absorb a lot of light. As a result, the system can turn large amounts of seawater into steam without forming a salt layer. We co-founded a company based on this innovation, and many other companies are taking note, especially in cities like Los Angeles where the water shortages are constant.

What advice do you give when training the next generation of young scientists on sustainability?

Liangbing Hu presents at the 2019 Blavatnik Science Symposium at The New York Academy of Sciences.

To younger scientists or engineers, I always say, “think out of the box”—but this is easier to say than to do. Re-invention very often happens from outsiders. I challenge young researchers to look at a topic like sustainability in a new way, to understand where the true challenges and problems lay, and then to apply your fundamentals in physics, chemistry, and mathematics without any boundaries. It is really about using disruptive ideas to attack new challenges in the real-world.

Wood is an invaluable natural resource. It is a renewable and sustainable material. The forest acreage in North America has been stable for close to a century, and the US Forest Service has reaffirmed that the utilization of “our Nation’s wood resources wisely and efficiently, while at the same time keeping our forests healthy” is a worthwhile endeavor.

For more information on this exciting new wood technology, see the 2019 Blavatnik Science Symposium eBriefing, Shaping the Future of Science .

To learn more about the Blavatnik Awards for Young Scientists, visit blavatnikawards.org.

Resolving the World’s Challenges through Collaboration

A massive group shot of people posing outside during the forum.

Founded in 2004 by the former minister to the Japanese government, Koji Omi, The Science and Technology in Society (STS) forum was created to provide a new mechanism for informal, open discussion between scientists and government leaders from around the world.

Published Oct 23, 2020

By Benjamin Schroeder, PhD

Resolving the World’s Challenges – Learnings from the STS Forum.

The goal: to resolve the new challenges facing the world, including global warming, pollution, food shortages, overpopulation, and the need to develop renewable energy sources. Each year, leaders from science, technology, and government converge in Kyoto, Japan for a unique summit, which is referred to as the STS forum.

Over a decade ago, The New York Academy of Sciences forged a partnership with the organizers of the STS forum, through the Academy’s then President and CEO, Ellis Rubinstein. Subsequently, Rubinstein was elected to serve as Council Member — a seat that has recently been assumed by the new Academy President and CEO, Prof. Nicholas B. Dirks. As part of the partnership between the two organizations, each year the Academy selects eight scientists under the age of 40. Two each, from North America, Europe, Asia, and the developing world are then invited to the Annual Meeting in Kyoto, Japan.

In 2019, two Blavatnik Scholars, Dr. Moran Bercovici (MB) and Dr. Wilhelm Palm (WP), were selected as representatives from Europe. Dr. Bercovici was honored as the Laureate in Chemistry for the 2019 Blavatnik Awards for Young Scientists in Israel, and Dr. Palm was a Blavatnik Regional Awards for Young Scientists Finalist in the field of Chemistry in 2017. We asked them to share some memories of last year’s STS forum.

What were some of your fondest memories from the 2019 Science and Technology in Society forum in Kyoto, Japan?

Moran Bercovici (far right) and Wilhelm Palm (second from right) with a group of STS Forum young delegates.

MB: Receiving advice from Nobel Laureates over drinks; listening to an inspiring talk by Japan’s then Prime Minister, Shinzo Abe; learning about climate change directly from leaders in the field; participating in round-tables with industry and government leaders; and generally, meeting great people who want to change the world for the better.

WP: I remember lively discussions with young leaders working in space technology, cybersecurity, and agricultural engineering all around the globe. And having a chat during the conference dinner at Kennin-ji temple, standing in front of the famous folding screen painting Wind God and Thunder God.

The STS forum is unique in that it brings together leaders not only from various scientific fields, but also from the government and private sectors as well. What were some of the advantages to such a gathering?

MB: It’s not often that we scientists get to go outside our ‘bubble’ and have close, personal interactions with government and industry leaders. The STS forum manages to set the right atmosphere where everyone leaves their ego at the door and is willing to discuss very openly the challenges and opportunities that technology and science bring to society.

WP: We all know that solutions are often found through interdisciplinary collaborations. But normally, for me that means to work with a biologist from a different field, or maybe a medical doctor or a chemist. But the STS forum was truly interdisciplinary, bringing people together from vastly different professional backgrounds and cultures. This was a lot of fun and really inspirational.

Who were some of the science VIPs that you were able to interact with? Did they have any advice that you have incorporated into your career?

Moran Bercovici speaking on a panel at the 2019 STS forum.

MB: If I had to choose one conversation that really affected me, it was the one with Prof. Ryoji Noyori. This came at a time that I was struggling and debating with myself on the question of ‘what is good research?’ I distinctly remember one particular piece of advice that he gave me: “Don’t be the best one in what you do. Be the only one”. This is now my compass.

WP: During the young leaders’ discussion with Nobel Laureates, I had the chance to talk to Prof. Ryoji Noyori, from the Japan Science and Technology Agency, and Nobel Laureate Prof. Ada Yonath from the Weizmann Institute. I found it helpful to get a personal account of how such pioneering scientists made their own way in different fields and systems. I also remember a dinner conversation with a Japanese university president, who recommended saké bars in Kyoto. From what I understand, interaction between Japanese scientists from different career stages are usually more formal, and it was nice to see that our hosts embraced a more relaxed way to interact with their Western guests.

Would you recommend this experience to other young scientists?

MB: I very much recommend this experience to anyone who is given the opportunity. Come with an open mind to experience something different, talk to anyone and everyone, and bring a big pile of business cards—you’re going to make lots of connections.

WP: Yes, definitely. In our daily work, we have to think deeply about the specific scientific problem that we are trying to solve. The STS forum is a chance to take a step outside and think about how science and technology can contribute to solving the grand challenges of our present and future. This was a profound experience for me as a scientist and as a person.

To learn more about the Blavatnik Awards for Young Scientists, visit blavatnikawards.org.

From Iowa to NYC: The Path of Gold

A man stands at a podium and delivers an address.

When astrophysicist Brian Metzger looks at the origins of black holes, all he sees is gold. It’s a perspective that has been years in the making.

Published October 20, 2020

By Marvin L. Cummings Jr., PhD

Brian Metzger, recipient of the American Astronomical Society’s HEAD Bruno Rossi Prize, gives a plenary lecture at the society’s 235th meeting at the Hawai’i Convention Center.

As a NASA Einstein Fellow at Princeton University in 2010, Metzger theorized that gold, along with other heavy and precious metals, was created during a collision of two merging neutron stars and that this process would create a luminous flare of emission known as a “kilonova” right before the merged stars collapse into a black hole.

In 2017, this prediction was proven true after LIGO detectors, large-scale observatories located in the states of Louisiana and Washington, pointed astronomers to a kilonova explosion that revealed evidence of heavy elements like gold.

Answering Long-standing Questions in Astrophysics

Metzger’s correct predictions about these long-standing questions in astrophysics that had eluded scientists for years—including how gold was made—propelled him to be named the 2020 Blavatnik National Awards for Young Scientists Laureate in Physical Sciences & Engineering.

The Blavatnik Family Foundation and The New York Academy of Sciences announced all three 2020 Laureates in July. Metzger, 39, a physics professor at Columbia University in New York, was also a Blavatnik National Awards Finalist in previous years, 2018 and 2019.

Metzger said important discoveries in his field – and answers to everyday, fundamental science questions – are becoming close in reach, thanks in part to advanced LIGO detectors, which can measure cataclysmic gravitational wave events, and other astronomical tools (satellites).

Before Metzger’s research, he said, “we didn’t know where these elements came from, and now we think a very large fraction of them do come from these merging neutron star systems.”

Closer to home, “it’s an incredible realization that the precious metals in my wedding band were likely forged in the vicinity of a black hole,” he said.

Hailing from the Hawkeye State

Brian Metzger giving a public lecture in his hometown of Burlington, Iowa.

Growing up in Burlington, Iowa, the hometown of many famous scientists, Metzger had a local connection to science. He was amazed by Dr. James Van Allen, a University of Iowa alumnus and professor who discovered the Van Allen radiation belts. Also, Dr. Edward Jones, the principal investigator of the Voyager missions, which flew to the outer solar system and took up-close pictures of the planets.

“I remember looking at images from Voyager, of the planets, and really wondering what were these exotic alien worlds?” he said.

Metzger also credits his science background to his mom, an art teacher who turned to science when her school’s art program was cut. He remembers turning the pages of his mom’s astronomy textbooks and being fascinated. Seeing his mom blend her creativity with science taught him that science is nothing but “constrained creativity”—creativity with rules.

At Columbia, Metzger said he’s motivated by working with his students and colleagues who come from diverse backgrounds. He said their strengths and expertise not only compliment his own, but also span wider than what he can offer.

Metzger said he’s long followed advice from his doctorate adviser: Be yourself and play to your strengths.

That guidance has proven to be gold, no pun intended. That’s because, Metzger said, you should look to “find the collaborator who makes up for your weaknesses or complements you”—a combination that can help solve the universe’s biggest mysteries.

To learn more about the Blavatnik Awards for Young Scientists, visit blavatnikawards.org.

Clues to Disease Revealed in the Physics of Cells

A man poses for the camera inside his research lab.

Clifford Brangwynne, PhD, credits his start in science to Fritjof Capra’s popular science book, “The Tao of Physics” about the implications of quantum theory.

Published October 7, 2020

By Marvin L. Cummings Jr., PhD

Clifford Brangwynne, PhD. Credit: John D. & Catherine T. MacArthur Foundation

That book—and a random ride home from his high school job at Barnes & Noble with an MIT graduate student in materials science—lit the spark.

“I was a late bloomer,” Brangwynne said. “I wasn’t one of those kids with a chemistry set in my basement, competing on the math team and all of that.”

By his freshman year at Carnegie Mellon University, Brangwynne decided to take an introduction to materials science course. He remembers being enthralled during a lab activity pouring molten aluminum alloys at over 1,000°Celsius to study the crystallization process. And he’s been hooked ever since.

That introduction to materials science, paired with his fascination with cell biology, how cells function, and how they move, has led him to a stellar scientific career, evidenced most recently by being named the 2020 Blavatnik National Awards for Young Scientists Laureate in Life Sciences.

From Finalist to Laureate

The Blavatnik Family Foundation and The New York Academy of Sciences announced all three 2020 Laureates in July. Brangwynne was also a Blavatnik National Awards Finalist in 2019 and 2018.

Now a biophysicist and bioengineer at Princeton University, Brangwynne was honored for his discovery of liquid-liquid phase separation as a cellular organizing principle. Cells typically separate the many biochemical reactions they perform by surrounding them in a membrane. In liquid-liquid phase separation, reactions are separated without a membrane into groupings called condensates, similar to tiny oil droplets that separate from vinegar in newly shaken salad dressing.

Without the restrictions of membranes, cells can benefit from the constant formation of new and different biochemical reactions. His studies suggest that when this process goes awry, cells can die. This can then lead to medical conditions such as Alzheimer’s disease or ALS (amyotrophic lateral sclerosis).

“The recognition of this new field at the interface of cell biology and soft matter physics inspires my lab to continue breaking the barriers separating scientific disciplines,” Brangwynne said.

The First from Princeton University

The first Blavatnik National Awards Laureate from Princeton University, Brangwynne is a professor in the Department of Chemical and Biological Engineering. He also is an investigator at the Howard Hughes Medical Institute—one of the most sought-after appointments in biomedical research.

Before finding his footing in science and academia, Brangwynne thought that science would be a lonely profession. He grew up in Boston in what he said was a “large, wonderful” working-class family “full of electricians and plumbers and house painters and nurses.”

From that, he said, he had a misconception of an “isolated scientist, working alone” and never speaking to others. “I realize now that that was incredibly mistaken,” he said, describing his work as social, interesting, and multidimensional.

He compared running his lab to a team sport, allowing him to interact with students and scientists across different areas of expertise.

Outside the lab, he enjoys reading about history and spending time with his family of five.

Brangwynne said his several mentors fueled his passion and pushed him to follow his scientific instincts. The greatest piece of advice he has ever received? “Do what you love and the rest will take care of itself.”

To learn more about the Blavatnik Awards for Young Scientists, visit blavatnikawards.org.

Harnessing Chemistry to Improve the Human Condition

A man delivers an address during the symposium.

The real power of science hit William R. Dichtel, PhD, when he was an undergraduate at the Massachusetts Institute of Technology.

Published September 17, 2020

By Marvin L. Cummings Jr., PhD

William R. Dichtel, PhD

Working in the lab of his mentor, Prof. Timothy M. Swager, he looked for ways to detect explosives, the so-called legacy landmines ­– deadly unexploded landmines left behind from war-torn regions worldwide. It was, Prof. Dichtel said, the first time he realized how much creativity is involved in science – more than just facts in a textbook.

That principle – using the tools of science to improve the human condition – has carried him to the top of his profession, named the 2020 Blavatnik National Awards for Young Scientists Laureate in Chemistry. The Blavatnik Family Foundation and The New York Academy of Sciences announced all three 2020 Laureates in July. Prof. Dichtel was a Blavatnik National Awards Finalist in 2017 and in 2019.

“Training Scientists of the Future”

Now an organic chemist at Northwestern University, Prof. Dichtel was recognized for his groundbreaking chemical methods that he uses to invent novel, porous materials from simple, carbon-based building blocks. One of these porous materials removes toxic pesticides and industrial pollutants from drinking water.

In 2016, he co-founded Cyclopure, a startup company to move these materials beyond the lab and into commercial use. He also is actively developing new methods to make plastics more sustainable and recyclable.

Prof. Dichtel, the first Blavatnik National Awards Laureate selected from Northwestern University, still teaches parts of the university’s introductory organic chemistry course, furthering his goal of inspiring the next generation to solve complex problems with chemistry.

Prof. Dichtel presenting at the 2019 Blavatnik Science Symposium at The New York Academy of Sciences.

“It is a true privilege to tackle leading scientific problems,” Prof. Dichtel said. “We’re definitely producing science and we’re discovering things, but along the way, we are building a community and we’re training scientists of the future.”

Outside of the lab, Prof. Dichtel, a Texas native who grew up in Roanoke, Virginia, is a competitive long-distance swimmer. In August, he completed the Chicago Skyline marathon swim in Lake Michigan, setting a record with a finish at just under 12-and-a-half hours.

What was he thinking during that long, watery stretch? “Weird mental tangents and occasional bars from Hamilton or Jason Isbell lines, though mostly just being in the moment,” he told his Twitter followers.

Repeated Failure Leads to Success

Earlier this year, he also had planned to swim the English Channel, but the pandemic scuttled that idea – for now.

To excel in science – and in his after-work vocation, sports – Prof. Dichtel follows a core rule: perseverance.

That’s key, he said, as well as developing communication skills in writing papers, presenting work and being a collaborator with others across multidisciplinary fields.

“This is a business of repeated failure so that one can be successful,” Prof. Dichtel said. “We get almost everything wrong, almost all the time. Just getting comfortable with that and still being not discouraged and logical about it is very, very important.”

To learn more about the Blavatnik Awards for Young Scientists, visit blavatnikawards.org.

When Artificial Intelligence Meets Physical Sciences

Artificial intelligence is quickly becoming a ubiquitous part of our daily lives. What can we expect as this technology continues to grow? And how will it impact you?

Published September 14, 2020

By Liang Dong

Alexandra Boltasseva, PhD

From virtual assistants like Siri to self-driving cars and computer-aided medical diagnoses, artificial intelligence (AI) affects our lives with unprecedented speed. Slowly but steadily, scientists in a broad range of fields have started to embrace AI in their research, hoping to significantly reduce the time needed to achieve new discoveries. This trend has become more obvious in the physical sciences, and in the field of materials science in particular, which is focused on the discovery and production of new, advanced materials imbued with desirable properties or functions. Think: screens of foldable smartphones; batteries that power electric cars; or materials that bend light around them, rendering them invisible.

How exactly could AI help materials scientists? We recently interviewed three honorees of the Blavatnik Awards for Young ScientistsAlexandra Boltasseva, PhD, Professor of Electrical and Computer Engineering at Purdue University; Léon Bottou, PhD, Principal Researcher at Facebook AI Research; and Sergei V. Kalinin, PhD, Corporate Fellow at Oak Ridge National Laboratory, who are contributing to an upcoming virtual symposium on October 6 and 7, AI for Materials: From Discovery to Production. Here’s what they had to say about the opportunities, as well as the challenges, in this rising field.

It is only recently that researchers in the physical sciences, like materials scientists, have begun to incorporate AI techniques into their work. Why do we need to take advantage of AI for this field? What benefits may AI offer materials science?    

Kalinin
Sergei V. Kalinin, PhD

AI offers a set of powerful tools to explore large volumes of multidimensional data in the physical sciences, and promises to uncover hidden functional relationships between the physical properties that we can observe. As such, AI methods are poised to become an inseparable part of all physical sciences, to enable discovery and hypothesis-driven research and to guide planning of experiments. We can take advantage of a broad range of AI techniques—from multivariate statistics to convolutional networks, unsupervised and semi-supervised methods, Gaussian processing, and reinforcement learning.

In addition, the proliferation of laboratory automation in areas from materials synthesis to imaging of materials’ molecular structures opens up broad opportunities for AI-driven experiments. For example, we will be able to adopt large-scale robotic systems or the microscale lab-on-a-chip platforms in our experiments, producing thousands or more materials in a single process.

Boltasseva

My own field, photonics, has truly been transformed by the concept of “inverse design,” meaning scientists input desired performances of photonic systems into computers and run physics-informed algorithms to figure out the best possible optical designs. The daunting challenge of this field lies in the inconceivably high computational power required for an exhaustive search within the extremely large, hyper-dimensional space of optical design parameters and constituent materials. Merging AI techniques with photonics is expected to not only enhance and enrich the design space, but, most importantly, to unlock novel functionalities and bring about disruptive performance improvements.

As compared to life sciences and pharmaceutical sciences, the application of AI in physical sciences is at least 10 years behind. What do you think is the biggest challenge for applying AI in physical sciences? How could the AI and physical sciences communities work together to address these challenges? 

Bottou
Léon Bottou, PhD

Using machine learning in physical sciences is not an obvious proposition. Recent advances in AI have shown how tasks in computer science, such as computer vision and machine translation, can be achieved using big data. Yet it would be unwise to claim that this success can be replicated in all scientific fields. Big data only reveal statistical correlations that are not always indicative of the causal relations that physicists often seek. To solve this question, the AI and physics communities may take the strategy of defining a hierarchy of problems for which one could envision using AI, such as:

  • Visualizing or measuring an ongoing physical phenomenon. These problems are the most accessible to AI/machine learning because they can directly leverage recent advances in computer vision and signal analysis in collecting data from physical experiments and computations.
  • Explaining a physical phenomenon. These problems belong to the next rung of difficulty because we need AI/machine learning systems that incorporate enough of our current knowledge of physics, and can then clarify the phenomenon of interest by constructing something interpretable on top of our current knowledge.
  • Designing a physical system that leverages a certain phenomenon in new ways. These are by far the most difficult problems, because they require AI/machine learning systems to accurately predict how the physical phenomenon will be affected by changes that are not included or prominent in the experimental data on which AI models have been trained.
Boltasseva

The physical sciences community should ultimately build extensive databases to unleash the power of AI. We should even set up an ‘optical structures and materials genome’ project to construct a comprehensive dataset of photonic concepts, architectures, components, and photonic materials to enable hierarchical machine learning algorithms that could provide ultimate-efficiency devices.

Kalinin

I agree with Alexandra. AI tends to proliferate in the communities that adopt the model of open sharing of codes and data. While some areas of physics research have undergone this transformation, many more require both enabling tools and proof-of-benefit to accelerate this process.

I also want to add on to Léon’s comment on the fundamental difference between the AI and physics communities. AI starts with purely correlative models, and tends to rely on big data. In comparison, research in physical sciences is strongly based on prior knowledge to explore the cause and effect relationships, and often assumes the presence of simple rules or descriptors that can give rise to complex behaviors in macroscopic systems. Experiments in physical sciences can give rise to huge data volumes, but these data can pertain only to one specific situation of the system and hence are not “big.”

In order to further leverage the benefits of AI in physical sciences, researchers have to possess both sufficient domain knowledge in physical sciences and expertise in machine learning, or forge robust interdisciplinary collaborations. Conferences like AI for Materials will help researchers in both fields form these kinds of interdisciplinary teams.

Also read: The Challenge of Quantum Error Correction

5G: The Future of Mobile Communications is Here

A woman gives a scientific lecture.

5G mobile technologies are being deployed at a rapid pace in major cities around the globe–from Shanghai to New York City, and techies, worldwide, excitedly agree that 5G will not only transform the way we communicate, but will fundamentally alter the way the manufacturing industry runs its factory floors.

Published September 1, 2020

By Marvin L. Cummings Jr., PhD

Prof. Elza Erkip speaking on 5G technologies at the 2019 Blavatnik Science Symposium held at The New York Academy of Sciences.

To help us understand what all the excitement around 5G really means to the average mobile user, we asked Elza Erkip, PhD, Institute Professor of Electrical and Computer Engineering at New York University and a 2010 Blavatnik Regional Awards Faculty Finalist, to share her thoughts on the new 5G technology being developed here in the United States, her research, and the future of mobile communications.

This interview has been condensed and edited for clarity.

What is 5G technology and what can 5G technology enable in our everyday lives?

Today, there are two technologies envisioned for 5G. In several parts of the world (such as Europe and China), a technology called “massive MIMO”, which is based on current 4G frequencies is being deployed. The United States favors a higher frequency version, known as the millimeter Wave (mmWave) technology. While the mm-wave technology provides faster communication, it requires new infrastructure and a denser deployment of base stations. Compared with today’s current technology, both flavors of 5G will give us a much higher speed of communication with lower delays.

There are many applications that are envisioned, such as autonomous driving vehicles; low weight, low cost robotics; and augmented reality (AR), and up to now, all of the advances made in communications have been based on the notion that humans use devices. However, with 5G technology, an Internet of Things (IoT) is being envisioned—a network of sensors and devices that are able to interact with one another. These machine interactions could enable even more applications, including, sensing in a field, home monitoring systems, and a host of healthcare applications.

How might 5G technologies and the Internet of Things (IoT) benefit industry?

Imagine a factory floor where airplanes are built by robots that work cooperatively with humans and also with one another to get any number of complex tasks done. Today, this does not happen in airplane manufacturing. For example, humans are needed inside the tight confines of a plane’s hull to perform any number of tasks, including tightening small screws.

To fully automate airplane manufacturing, a robot would need to be light-weight and carry very little computational power, since computations require such bulky hardware. However with a 5G wireless communication link, information in the form of data could be pushed to the cloud for computation, very quickly, and returned back from the cloud to the robot as fast real-time feedback, so the robot is free to only sense its environment while lifting its arm inside a plane without the worry of accidentally damaging other airplane parts.

Elza Erkip speaking with her NYU Faculty colleague and Blavatnik Awards Regional Judge Nasir Memon at the 2017 Blavatnik Science Symposium.

What role should engineers and researchers play in dispelling some of the myths and fears surrounding 5G?

There have been several studies looking at safety of high frequency 5G technology, and there is no scientific evidence showing 5G to be harmful to our health. Even though 5G researchers know this, we could do a better job of getting this information to the public. It is important for researchers to cite the proper scientific studies, and where possible, collaborate with doctors to further strengthen studies. I think this is an area where engineers could do better with public relations outreach to dispel myths.

Research in your lab is at the forefront of mobile technology. What specific questions are you addressing in your lab and how may it impact users of 5G technology?

My lab is looking at 5G technology from a variety of perspectives. 5G technologies are very energy-intensive, so we are looking into ways of lowering energy consumption while still maximizing the benefit that 5G can bring. We are also looking at privacy. When we surf the internet, we are constantly leaving digital “breadcrumbs” behind that reveal part of our identity.

No matter how well-intentioned a website or app, digital breadcrumbs can be brought together to compromise a user’s privacy or identity. For wireless technology, privacy becomes even more important. Digital breadcrumbs can be collected by apps on our phone, including data from wireless carriers on our mobility patterns. So, keeping the exciting tools that these apps enable while maintaining the privacy of wireless users is quite a challenge, and is something my research group is seriously thinking about, as well.

What interesting applications are being imagined for the future, beyond 5G technology?

Overall, the industry is looking to increase communication speeds even further, which might one day enable applications that currently sound like science fiction, such as 3D-hologram video conferencing. There is currently no real consensus on what a future 6G technology will bring, but there are some sophisticated ideas out there, like “edge computing,” which is a type of sharing of data-storage capabilities that could be optimized across a mobile network of systems and devices to further speed up communications.

For example, if you’re streaming your favorite show, the next episode could be uploaded to servers located closer to you rather than remaining on the streaming service’s centralized servers. This would reduce demand on wireless networks. Other features being discussed for 6G are wireless power transfer technologies that can power a drone and use the exact same signal to also communicate with the drone. Sounds a bit like science fiction, but a lot of good theoretical work in the mobile communications space suggests that this technology is a real possibility. We’re not there yet but the question in my mind is, “Can we make this a reality for 6G?”

To learn more about the Blavatnik Awards for Young Scientists, visit blavatnikawards.org.

Game Changers: Scientists Shaping the Future of Research in the UK

On March 5, 2020, the New York Academy of Sciences celebrated the Laureates and Finalists and winners of the 2020 Blavatnik Awards for Young Scientists in the United Kingdom. The one-day symposium featured fast-paced, engaging research updates from nine scientists working in diverse fields within life sciences, chemistry, and physical sciences and engineering. This year’s Blavatnik UK honorees are probing the deepest mysteries ranging from the universe to the human mind, tackling longstanding questions that have occupied scientists and philosophers for millennia. Is there life beyond our Solar system? How is knowledge organized in the brain? What is the fundamental nature of gravity? Find out how this game-changing group of young scientists is working to answer these questions in this summary of the symposium.

Symposium Highlights

  • Environmental factors can influence the defense strategies bacteria use to fend off invading viruses. Insights into this process are advancing the potential for phage therapy as an alternative to antibiotics.
  • New analytical and computational tools are revealing the neural machinery that allows the brain to create models of the world and facilitates decision-making and behavior.
  • Chemists can exploit chirality to create novel molecules with a wide variety of applications in drug design, consumer electronics, and catalysis.
  • The scientific community is closer now than ever to realizing the commercial potential of nuclear fusion as a source of clean energy.
  • The first viable theory of massive gravity might help explain some of the biggest mysteries in physics, including the accelerated expansion of the universe.

Hosted By

Victoria Gill
Science Correspondent
BBC News

Speakers

Tim Behrens, DPhil
University of Oxford and University College London

Ian Chapman, PhD
UK Atomic Energy Authority

Matthew J. Fuchter, PhD
Imperial College London

Stephen M. Goldup, PhD
University of Southampton

Kirsty Penkman, PhD
University of York

Claudia de Rham, PhD
Imperial College London

Eleanor Stride, PhD
University of Oxford

Amaury Triaud, PhD
University of Birmingham

Edze Westra, PhD
University of Exeter

Program Supporter

Changing the Game in Life Sciences

Speakers

Eleanor Stride, PhD
University of Oxford

Edze Westra, PhD
University of Exeter

Tim Behrens, DPhil
University of Oxford & University College London

Engineering Bubbles

Mechanical engineer Eleanor Stride never planned to design drug delivery systems. She was “convinced I wanted to spend my career designing Aston Martins,” until a chance discussion with a supervisor piqued her interest in therapeutic applications of engineered microbubbles. Just two microns in diameter, microbubbles can be used as ultrasound contrast agents, but Stride sees a role for these tiny tools in the fight against cancer. “In many cases, the problem with cancer drugs [is] how we deliver them,” she said, explaining that systemic chemotherapy agents often cannot penetrate far enough into tumors to be effective. These drugs can also cause side effects and damage healthy tissues.

Microbubbles can help sidestep these challenges, safely encapsulating drug molecules within a stabilizing shell.  The shell can be functionalized with magnetic nanoparticles, allowing clinicians to direct the bubbles’ aggregation at tumor sites and visualize them with ultrasound. As the bubbles compress and release in response to the ultrasound beam, the oscillation helps the bubbles penetrate into the surrounding tissue. “If we increase the ultrasound energy, we can destroy the bubble, allowing us to release the drugs on demand,” said Stride, noting that molecules released from a single 2-micron microbubble can circulate up to 100 times that diameter, pumping drugs deep into tumor tissues. This approach is highly localized—drugs are only released at the tumor site—which eliminates the potential for systemic toxic effects.

Ultrasound-stimulated oscillation of microbubbles creates a vortex in surrounding fluids. The vortex pumps drug molecules deep into tumor sites.

In 2019, Stride and a team of collaborators published the results of trials using oxygen-loaded magnetic microbubbles to treat malignant pancreatic tumors. In animal models, tumors treated with microbubble-delivered drugs showed dramatic spikes in cell death and also shrank in size, “which can mean the difference between a surgeon being able to remove a tumor or not,” said Stride. Additional experiments have helped hone techniques for external magnetic control of microbubbles within blood vessels to ensure precise, targeted drug delivery—a critical step toward tailoring this method for use in humans. Stride and her collaborators aim to launch a clinical trial in pancreatic cancer patients “in the very near future.”

Insights From Bacteria-Phage Interactions

As the fight against viruses dominates the news cycle, 2020 Blavatnik Awards UK Finalist Edze Westra shared an update from the front lines of a viral war billions of years in duration: the “evolutionary arms race” between bacteria and the viruses that infect them, called phages. The interactions between bacteria and phages—the most abundant biological entities on Earth—have profound implications for the development of phage-based therapies as alternatives to antibiotics.

Phages are often successful killers, but bacteria have evolved sophisticated immune strategies to resist attacks. Understanding how and when bacteria deploy each of these defensive tactics is key to designing phage therapies to treat bacterial infections.

Like humans, bacteria utilize both innate and adaptive immune responses to invading pathogens. In bacteria, innate immunity relies on the modification of surface structures to prevent phages from attaching. This system is effective, yet it creates no “record,” or memory, of which phages it encounters. The adaptive immune system, however, allows bacteria to build a database of previously encountered pathogens in the form of bits of genetic material snipped from invading phages and incorporated into the bacterium’s own DNA. The adaptive immune system, known as CRISPR immunity, forms the basis of CRISPR-Cas genome editing techniques. “There’s a critical balance between these two systems, and both are critical for survival,” said Westra, whose research aims to determine the factors that influence whether a bacterium mounts an innate or adaptive immune defense against a particular phage.

Using Pseudomonas aeruginosa, an antibiotic-resistant pathogen that often infects cystic fibrosis patients, Westra determined that a bacterium’s environment—specifically, the level of available nutrients—determined which defensive strategy was utilized. In high-nutrient environments, almost all bacteria deployed an innate immune response to phage attacks, whereas in lower nutrient settings, CRISPR immunity dominated.

The level of available nutrients influences which immune strategy bacteria use to defend against phage attacks.

In experiments using moth larvae, Westra discovered that infections were more severe when bacteria utilized CRISPR immunity, whereas bacteria that evolved innate immunity often caused less aggressive infections. “If we can manipulate how bacteria evolve resistance to phages, this could potentially revolutionize the way we approach antimicrobial resistance, with major benefits to our healthcare,” Westra said.

Building Models of the World

Computational neuroscientist Timothy Behrens is fascinated with the basic functions and decisions of everyday life—the process of navigating our home or city, the steps involved in completing household tasks, the near-subconscious inferences that inform our understanding of the relationships between people and things. Behrens designs analytical tools to understand how neuronal activity in the brain gives rise to these thought processes and behaviors, and his research is illuminating how knowledge is organized in the brain.

The activities of grid cells and place cells are well understood. By creating spatial maps of the world, grid and place cells allow us to navigate familiar spaces and locate items, such as car keys. Behrens explained that much less is known about how the brain encodes non-spatial, abstract concepts and sequence-based tasks, such as loading, running, and emptying a dishwasher. Over the past several years, Behrens and his collaborators have demonstrated that abstract information is similarly mapped as grid-like codes within the brain. “On some level, all relational structures are the same, and all are handled by the same neural machinery,” he said. This insight helps explain the effects of diseases like Alzheimer’s, which targets grid and place cells first and impacts both spatial and non-spatial knowledge.

Relational information is encoded by the same neural machinery that encodes spatial and navigational maps.

In another line of research, Behrens is probing a phenomenon called replay, during which the brain revisits recent memories as a means to consolidate knowledge about current events and anticipate future ones. Behrens illustrated the concept by showing patterns of neuronal activity as a rat runs around a track, then rests. Even at rest, the rat’s brain displays millisecond-long flashes of neuronal activity that mimic those that take place during running. “He’s not running down the track anymore, but his brain is,” said Behrens. Replay also underlies the human ability to understand a simple story even when it’s told in the wrong order. “Our knowledge of the world tells us…what the correct order is, and replay will rapidly stitch together the events in the correct order.”

Computational tools developed in Behrens’ lab have been shared with thousands of scientists around the globe as they pursue new hypotheses about the neural computations that control cognition and behavior. “It’s an exciting time to be thinking about the brain,” Behrens said.

Further Readings

Stride

Beguin E, Shrivastava S, Dezhkunov NV, et al.

Direct Evidence of Multibubble Sonoluminescence Using Therapeutic Ultrasound and Microbubbles

ACS Appl Mater Interfaces. 2019 Jun 5;11(22):19913-19919

Beguin E, Bau L, Shrivastava S, Stride E.

Comparing Strategies for Magnetic Functionalization of Microbubbles

ACS Appl Mater Interfaces. 2019 Jan 16;11(2):1829-1840

Westra

Alseth EO, Pursey E, Luján AM, et al.

Bacterial Biodiversity Drives the Evolution of CRISPR-based Phage Resistance in Pseudomonas Aeruginosa

Nature. 2019 Oct;574(7779):549-552

Westra ER, van Houte S, Gandon S, Whitaker R.

The Ecology and Evolution of Microbial CRISPR-Cas Adaptive Immune Systems

Philos Trans R Soc Lond B Biol Sci. 2019 May.13;374(1772):20190101

Behrens

Liu Y, Dolan RJ, Kurth-Nelson Z, Behrens TEJ

Human Replay Spontaneously Reorganizes Experience

Cell. 2019 Jul 25;178(3):640-652.e14

Constantinescu AO, O’Reilly JX , Behrens TEJ

Organizing Conceptual Knowledge in Humans With a Gridlike Code

Science. 2016 Jun 17;352(6292):1464-1468

Behrens TEJ, Muller TH, Whittington James CR

What Is a Cognitive Map? Organizing Knowledge for Flexible Behavior

Neuron. 2018 Oct 24;100(2):490-509

Changing the Game in Chemistry

Speakers

Matthew J. Fuchter, PhD
Imperial College London

Stephen M. Goldup, PhD
University of Southampton

Kirsty Penkman, PhD
University of York

Exploiting Molecular Shape to Develop Materials and Medicines

Consider the handshake: a greeting so automatic it takes place without thinking. Two right hands extend and naturally lock together, but as Matthew Fuchter explained, that easy connection becomes impossible if one party offers their left hand instead. The fumbling that ensues stems from a type of asymmetry called chirality. Chiral objects, such as hands, are mirror-image forms that cannot be superimposed or overlapped, and when one chiral object interacts with another, their chirality dictates the limits of their interaction. Chirality can be observed throughout nature, from the smallest biological molecules to the structures of skyscrapers.

In organic chemistry, molecular chirality can be exploited to tremendous advantage. Fuchter explained that the shape of molecules “is not only critical for their molecular properties, but also for how they interact with their environment.” By controlling subtle aspects of molecular shape, Fuchter is pioneering new strategies in drug design and devising solutions to technological problems that plague common electronic devices.

The notion of pairing complementary molecular geometries to achieve a specific effect is not unique to drug design—such synchronicities can be found throughout nature, including in the “lock and key” structure of enzymes and their substrates. Fuchter’s work aims to invent new drug molecules with geometries perfectly suited to bind to specific biological targets, including those implicated in diseases such as malaria and cancer.

Only one of these two chiral molecules has the correct orientation, or “handedness” to bind to the receptor site on the target protein.

Fuchter is also exploring applications for chirality in a field where the concept is less prominent—consumer electronics. Organic LED, or OLED, technology has “revolutionized the display industry,” allowing manufacturers to create ultra-thin, foldable screens for smartphones and other displays. Yet these features come at a steep efficiency cost—more than half of the light generated by OLED pixels is blocked by anti-glare filters added to the screens to minimize reflectiveness. A novel solution, in the form of chiral molecules bound to non-chiral OLED-optimized polymers, induces a chiral state of light called circularly polarized light. These circularly polarized, chiral light molecules are capable of bypassing the anti-glare filter on OLED screens. Fuchter noted that displays are far from the only technology that stands to be impacted by the introduction of chiral molecules. “Our research is generating new opportunities for chiral molecules to control electron transport and electron spin, which could lead to new approaches in data storage,” he said.

Making Use of the Mechanical Bond

Most molecules are bound by chemical bonds—strong, glue-like connections that maintain the integrity of molecules, which can be both simple, such as hydrogen, and highly complex, such as DNA. 2020 Blavatnik Awards UK Finalist Stephen Goldup’s work focuses on a less familiar bond. Mechanical bonds join molecules in a manner akin to an interconnected chain of links—the components retain movement, yet cannot separate.

Mechanically interlocked molecules have the potential to yield materials with “exciting properties,” according to Goldup, but in the decades since they were first synthesized, they have largely been regarded as “molecular curiosities.” Goldup’s lab is working to push these molecules beyond the laboratory bench by characterizing the properties of interlocked molecules and probing their potential applications in unprecedented ways. His work focuses on two types of mechanically bound molecules—catenanes, in which components are linked together like a chain, and rotaxanes, which consist of a ring component threaded through a dumbbell-shaped axle.

Goldup’s lab has taken cues from nature to introduce additional elements into rotaxanes, resulting in novel molecules with a variety of potential applications. For example, much as enzymes contain “pockets” within which small molecules can bind, rotaxanes too contain a space that can trap a molecule or ion of interest. Rotaxanes that bind metal ions have unique magnetic and electronic properties that could be used in memory storage devices or medical imaging. Inspired by proteins and enzymes that bind DNA, Goldup’s lab has also designed rotaxanes in which DNA itself is the “axle.” In theory, these molecules can be used to effectively “hide” portions of DNA and alter its biological behavior.

Just as enzymes bind small molecules with their structures, rotaxanes can bind molecules in the cavity between the ring and the axle.

Perhaps most significantly, Goldup’s lab has solved a longstanding obstacle to studying rotaxanes: the difficulty of making them. The problem lies in the fact that rotaxanes can be chiral even when their components are not, making it extremely challenging to synthesize a distinct “hand,” or version, of the molecule. Recalling Matthew Fuchter’s example of how an awkward left-hand/right-hand handshake differentiates the “handedness” of two chiral objects, Goldup explained how his lab developed a technique for synthesizing distinctly “left” or “right” handed rotaxanes by utilizing a chiral axle to build the molecules. “Our insight was that by making the axle portion chiral on its own, when we thread the axle into the ring, the rotaxanes we make are no longer mirror-images of each other. They have different properties, and they can now be separated,” he said. Once separate, the chiral portion of the axle can be chemically removed and replaced with other functional groups.

Goldup’s lab is conducting experiments with new mechanically-locked molecules—including chiral rotaxane catalysts— to determine where they may outperform existing catalysts.

Amino Acids as a Portal to the Past

Scientists have multiple methods for peering into the history of Earth’s climate, including sampling marine sediment and ice cores that encapsulate environmental conditions stretching back millions of years. “But this is an incomplete picture—akin to a musical beat with no notes,” said Kirsty Penkman, the 2020 Blavatnik Awards UK Laureate in Chemistry. The records of life on land—fossil records—provide “the notes to our tune, and if we know the timing, that gives us the whole melody,” she said.  Archaeologists, paleontologists, and climate scientists can harmonize fossil records with climate history to understand the past, yet their efforts stall with fossils older than 50,000 years—the limit of radiocarbon dating.

Penkman’s lab is developing dating methods for organic remains that reach far deeper into the history of life on Earth. Their strategy relies not on the decay of carbon, but the conversion of amino acid molecules from one form to another. Continuing the theme of chirality from previous presentations, Penkman explained that amino acids exist in two mirror-image forms. However, the body only synthesizes amino acids in the “left-handed,” or L-form. This disequilibrium shifts after death, when a portion of L-amino acids begins a slow, predictable conversion to the right-handed, or D-form. The older the fossil, the greater the balance between D and L isomers. This conversion process, called racemization, was first proposed as a dating method in the 1960s. Yet, it became clear that some of the fossil amino acids were vulnerable to environmental factors that impact the racemization rate, and therefore the date.

About 15 years ago, Penkman discovered that minute stores of proteins within the remains of snail shells are entrapped in intracrystalline voids. These tiny time capsules are unaffected by environmental factors. Studies have since confirmed that shells found in older horizons, for example deeper underground, contain higher ratios of D-amino acids versus those found at younger sites, thus validating the technique.

Calcitic snail shells found at older horizons have higher ratios of D-amino acids than those found at younger horizons.

Snail shells are often found in archeological sites, a serendipity that has led to astonishing findings about early human migration. Shells found alongside several Paleolithic tools “dated as far back as 700,000 years,” according to Penkman. “We’ve successfully shown that early humans were living in Northern Europe 200,000 years earlier than previously believed,” she said.

Penkman’s team has analyzed remains of ostrich eggshells at some of the earliest human sites in Africa, discovering fully preserved, stable sequences of proteins in shells dating back 3.8 million years. Mammalian remains are the next frontier for Penkman’s lab. They have analyzed amino acids in ancient tooth enamel—including that of a 1.7-million-year-old rhinoceros—and are developing microfluidic techniques to sample enamel from early human remains.

Further Readings

Fuchter

Yang Y, Rice B, Shi X, et al.

Emergent Properties of an Organic Semiconductor Driven by its Molecular Chirality

ACS Nano. 2017 Aug 22;11(8):8329-8338

Yang Y, Correa da Costa R, Fuchter MJ, Campbell AJ

Circularly polarized light detection by a chiral organic semiconductor transistor

Nat. Photonics. 2013 July 21;7:634–638

Goldup

Jamieson EMG, Modicom F, Goldup SM

Chirality in Rotaxanes and Catenanes

Chem Soc Rev. 2018 Jul 17;47(14):5266-5311

Lewis JEM, Beer PD, Loeb SJ, Goldup SM

Metal Ions in the Synthesis of Interlocked Molecules and Materials

Chem Soc Rev. 2017 May 9;46(9):2577-2591

Galli M, Lewis JEM, Goldup SM

A Stimuli-responsive Rotaxane–Gold Catalyst: Regulation of Activity and Diastereoselectivity

Angewandte Chemie International Edition. 2015

Penkman

Penkman KEH, Kaufman DS, Maddy D, Collins MJ

Closed-system Behavior of the Intra-crystalline Fraction of Amino Acids in Mollusk Shells

Quaternary Geochronology. 2008. Feb-May; 3, 1–2:2-25

Demarchi B, Hall S, Roncal-Herrero T, et al

Protein Sequences Bound to Mineral Surfaces Persist Into Deep Time

eLife. 2016 Sep 27;5:e17092

Penkman KEH, Preece RC, Bridgland DR, et al

A Chronological Framework for the British Quaternary Based on Bithynia Opercula

Nature. 2011 Jul 31;476(7361):446-9

Changing the Game in Physical Sciences and Engineering

Speakers

Amaury Triaud
University of Birmingham

Ian Chapman
UK Atomic Energy Authority and Culham Centre for Fusion Energy

Claudia de Rham
Imperial College London

Worlds Beyond Our Solar System

For millennia, humans have wondered whether life exists beyond our planet.  Amaury Triaud, 2020 Blavatnik Awards UK Finalist believes we are closer to answering that question now than at any other time in history. The study of exoplanets—planets that orbit stars other than the Sun—offers what Triaud believes is “the best hope for finding out how often genesis happens, and under what conditions.”

The search for exoplanets has revealed remarkable variety among stars and planets in our galaxy. “The universe is far more surprising and diverse than we anticipated,” said Triaud. Astronomers have identified thousands of exoplanets since 1995, and now estimate that there are more planets in the Milky Way than stars—”something we had no idea about ten years ago,” Triaud said. Many exoplanets orbit stars so much smaller than the Sun that these stars cannot be seen with the naked eye.  Yet these comparatively small stars provide “optimal conditions” for exoplanet hunters.

Exoplanets are often detected using the transit method—as an orbiting planet passes in front of a star, its shadow temporarily dims the star’s brightness. The larger the planet relative to the star, the greater its impact on the brightness curve and the easier for astronomers to detect. While monitoring a small star 39 light-years from Earth, TRAPPIST-1, a team of astronomers, including Triaud, discovered an exoplanet system comprised of seven rocky planets similar in size to Earth, Venus, and Mercury.

“The next question is to find out whether biology is happening out there,” said Triaud, joking that the biology of interest is not little green men, but rather green algae or microbes similar to the ones that fill our atmosphere with oxygen. The presence of oxygen “acts like a beacon through space, broadcasting that here on Earth, there is life,” said Triaud, explaining that the only way to gauge the presence of life on exoplanets is through atmospheric analysis. Using transmission spectroscopy, Triaud and other astronomers will look for exoplanets that possess an atmosphere and chemical signatures of life, such as oxygen, ozone, or methane, in the atmospheric composition of exoplanets.

Measurements of spectral signatures in a planet’s atmosphere can reveal the presence of gases associated with life, including oxygen and methane. 

Such analyses will begin with the launch of the James Webb telescope in 2021.  In the meantime, a land-based mission called Speculoos, based partially in Chile’s Atacama desert, is monitoring 1,400 stars in search of additional exoplanets. “It’s rather poetic that from one of the most inhospitable places on Earth, we are on the path to investigating habitability and the presence of life in the cosmos,” Triaud said.

The Path to Delivering Fusion Power

“There’s an old joke that nuclear fusion is 30 years away and somehow always will be,” said 2020 Blavatnik Awards UK Finalist Ian Chapman, but he insists that the joke will end soon. According to Chapman, the “ultimate energy source” is entering the realm of reality. “We’re now in the delivery era, where fusion lives up to its potential,” he said. Low-carbon, low-waste, capable of producing tremendous amounts of energy from an unlimited fuel source—seawater—and far safer than nuclear fission, fusion power has a long list of desirable qualities. Chapman is the first to acknowledge that fusion is “really hard,” but his work is helping to ease the challenges and bring a future of fusion into focus.

Nuclear fusion relies on the collision of two atoms—deuterium, or “heavy” hydrogen, and tritium, an even heavier isotope of hydrogen. Inside the Sun, these atoms collide and fuse, producing the heat and energy that powers the star. Replicating that process on Earth requires enough energy to heat the fuel. of deutrium and tritium gases to temperatures ten times hotter than the Sun, a feat that Chapman admits “sounds bonkers, but we do it every day.”

Within fusion reactors called tokamaks, this superhot fuel is trapped between arrays of powerful magnets that “levitate” the jet as it spins around a central magnetic core, preventing the fuel from melting reactor walls. Yet this is an imperfect process, explained Chapman, and due to fuel instabilities, eruptions akin to “throwing a hand grenade into the bottom of the machine” happen as often as once per second. Chapman devised a method based on his numerical calculations for preventing these eruptions using additional magnet arrays that induce three-dimensional perturbations, or “lobes” at the edge of the plasma stream. Just as a propped-open lid on a pot of boiling water allows steam to escape, these lobes provide a path to release excess pressure.

An array of magnets near the plasma edge creates perturbations in the fuel stream, allowing pressure to escape safely.

Chapman’s technique has been incorporated into the “the biggest scientific experiment ever undertaken by humankind”—a massive tokamak called ITER, roughly the size of a football stadium and equipped with a central magnet strong enough to lift an aircraft carrier. Scheduled to begin producing power in 2025, ITER aims to demonstrate the commercial viability of nuclear fusion. “We can put 50 megawatts of power into the machine, and it produces 500 megawatts of power out,” said Chapman. “That’s enough to power a medium-sized city for a day.”

Even before ITER’s completion, Chapman and others are setting their sights on designing less expensive fusion devices. Late last year, the UK committed to building a compact tokamak that offers the benefits of fusion with a smaller footprint, and Chapman is the leader of this project.

The Nature of Gravity

Claudia de Rham, the 2020 Blavatnik Awards UK Laureate in Physical Sciences and Engineering, concluded the day’s research presentations with an exploration of nothing less than “the biggest mystery in physics today.”  For decades, cosmologists and physicists have grappled with discrepancies between observations about the universe—for example, its accelerated expansion— and Einstein’s general theory of relativity, which dictates that gravity should gradually slow that expansion. “The universe is behaving in unexpected ways,” said de Rham, whose efforts to resolve this question stand to profoundly impact all areas of physics.

Understanding the fundamental nature of gravity is key to understanding the origin and evolution of the universe. As de Rham explained, gravity can be detected in the form of gravitational waves, which are produced when two black holes or neutron stars rotate around each other, perturbing the fabric of spacetime and sending rippling waves outward like a stone tossed into a pond. But gravity can also be represented as a fundamental particle, the graviton, similar to the way light can be considered as a particle, the photon, or an electromagnetic wave.  Unlike the other fundamental particles such as the photon, the electron, the neutrino, or even the famously elusive Higgs boson, the graviton has never been observed. In theory, the graviton would, like all fundamental particles, exist even in a perfect vacuum, a phenomenon known as vacuum quantum fluctuation. Unknown in Einstein’s day, vacuum quantum fluctuations, when factored into the general theory of relativity, do predict an accelerated expansion of the universe. “That’s the good news,” said de Rham. “The bad news is that the predicted rate of expansion is too fast by at least 28 orders of magnitude.”

This raises the possibility that “general relativity may not be the correct description of gravity on large cosmological scales,” said de Rham. If the graviton had mass, however, it would impact the behavior of gravity on the largest scales and could explain the observed rate of expansion.

Signal patterns from gravitational wave events can serve as models for estimating the mass of the graviton. By comparing the expected signals produced by either a massless particle or a high-mass particle with actual signal patterns from detected events, physicists can place an upper and lower boundary on the graviton’s potential mass.

The idea of a massive graviton has been considered—and refuted—by physicists as far back as the 1930s. Several years ago, de Rham, along with collaborators Andrew Tolley and Gregory Gabadadze, “realized a loophole that had evaded the whole community.” Together, they derived the first theory of massive gravity. “Through gravity, we can now connect small vacuum fluctuations with the acceleration of the universe, linking the infinitely small with the infinitely large,” de Rham said.

Determining the mass of the graviton requires the most precise scale imaginable, and de Rham believes that gravitational wave observatories are perfectly suited to the task. Whether her theory will hold up in future tests remains to be seen, but when it comes to solving this epic mystery, “the possibility is now open.”

Further Readings

Triaud

Gillon M, Triaud AH, Demory BO, et al.

Seven temperate terrestrial planets around the nearby ultracool dwarf star TRAPPIST-1

Nature. 2017 Feb 22;542(7642):456-460

Gillon M,  1 , Jehin E, Lederer SM, et al

Temperate Earth-sized Planets Transiting a Nearby Ultracool Dwarf Star

Nature. 2016 May 12;533(7602):221-4

de Wit J, Wakeford HR, Gillon M, et al

A Combined Transmission Spectrum of the Earth-sized Exoplanets TRAPPIST-1 B and C

Nature. 2016 Sep 1;537(7618):69-72

Chapman

Kirk A, Harrison J, Liu Y, et al.

Observation of Lobes Near the X Point in Resonant Magnetic Perturbation Experiments on MAST

Phys Rev Lett. 2012 Jun 22;108(25):255003

Chapman IT, Morris AW

UKAEA Capabilities to Address the Challenges on the Path to Delivering Fusion Power

Philos Trans A Math Phys Eng Sci. 2019 Mar 25;377(2141):20170436

Claudia de Rham

de Rham C.

Massive Gravity

Living Rev Relativ. 2014;17(1):7.

de Rham C, Gabadadze G, Tolley AJ

Resummation of Massive Gravity

Phys Rev Lett. 2011 Jun 10;106(23):231101

de Rham C, Deskins JT, Tolley AJ, Zhou S.

Graviton Mass Bounds

Rev. Mod. Phys. 89 (2017), 025004

Panel Discussion: Hopes for the Future

Speakers

Ian Chapman, PhD
UK Atomic Energy Authority

Kirsty Penkman, PhD
University of York

Eleanor Stride, PhD
University of Oxford

Edze Westra, PhD
University of Exeter

Victoria Gill
BBC News (Moderator)

Several Laureates and Finalists of the 2020 Blavatnik Awards in the UK joined BBC science reporter Victoria Gill for the final session of the day, a wide-ranging panel discussion that touched on issues both current and future-looking.

Two themes—fear and opportunity— emerged as powerful forces shaping science and society, especially as it relates to climate change and the threat of emerging infectious disease. Gill noted that climate change is “the biggest challenge ever to face humanity,” and that many efforts to raise awareness of its impacts focus on bleak projections for the future. Asked for insights on shifting the tone of climate change communications, Kirsty Penkman acknowledged that “there needs to be a certain level of fear to get people’s attention.” She then advocated for a solutions-oriented plan rooted in the fast pace of scientific progress in clean energy, among other areas. “This is an amazing opportunity,” she said. “Humans are ingenious….in the last 120 years we’ve moved from a horse-drawn economy to a carbon-based economy, and in 5 or 20 years we could be in a fusion-based economy. We have the potential to open up a whole new world.” Eleanor Stride suggested combatting complacency by emphasizing the power of small changes in mitigating the impact of climate change. “One billion people making a tiny change has a huge impact,” she said.

The specter of a coronavirus pandemic had not yet become a reality at the time of the symposium. But Edze Westra presciently detailed the challenges of containing a highly contagious emerging pathogen in a “tightly connected world.” He commented that detecting and containing emerging diseases hinges on the development of new diagnostics, and that preventing future outbreaks will require cultural shifts to limit high-risk interactions with wildlife. For zoonotic diseases such as the novel coronavirus, “it’s all about opportunity,” Westra said.

Panelists also looked to the future of science, touching on issues of equality, discrimination, and diversity, and emphasizing the importance of raising the bar for science education. Stride noted that children are natural scientists, gravitating toward problem-solving and puzzles regardless of nationality or gender. “But something happens later,” she said, lamenting the drop in interest in science as children progress in school. “One of the things that gets lost is that creativity, which is what science really is—we’re coming up with a guess and trying to gather evidence for it—we’re not just learning a huge number of facts and regurgitating them,” she said.

In the wake of Brexit, panelists expressed concern about potential difficulties in attracting international students to their labs. “Diversity is so important,” said Penkman. “Getting ideas from all around the world from people with different backgrounds is essential to making science in the UK—and the world—the best it can be.” In her closing comments, Penkman said that ultimately, the trajectory of science comes down to the people in the field. “My eternal optimism is in the people I work with and the people I talk to when I visit schools—it’s that innate interest and curiosity. Whenever I see it, I feel that is the future of science,” she said.

The Neuroscience of Mosquito Blood Meals

A woman in a research lab examines a sample.

When 2019 Blavatnik Regional Award Winner, Laura Duvall, PhD, started her postdoctoral research at The Rockefeller University under the mentorship of Leslie Vosshall, PhD, – herself a Blavatnik Award Winner – Duvall was not expecting to study mosquitoes.

Published June 26, 2020

By Ben Ragen, PhD

Laura Duvall, PhD. Credit: The Rockefeller University

In graduate school she had studied circadian rhythms in the fruit fly. However, Vosshall had just started a new chapter in her research program, which focused on mosquito behavior. This research topic posed a great challenge to Duvall as both the model organism, the mosquito, and the behavior, blood feeding, were completely new to her. However, Blavatnik Scholars do not shy away from a challenge.

Upon joining the lab, Duvall sought to understand the neurological circuits that drive mosquito blood feeding and breeding behavior. The goal? If we can intervene in ways that mosquitoes feed on humans, or the ways that mosquito populations grow, we can design new ways to control mosquito populations, and stop the spread of mosquito-borne diseases such as Zika and dengue.

As it happens, these questions are highly intertwined. Only female mosquitos consume “blood meals” (i.e. bite and consume blood from humans or other animals); these blood meals provide the nourishment they need to mature and lay their eggs. After a single blood meal a female will not bite for several days. Duvall wanted to understand the neural system that signals to females to not feed again.

Behavioral, Molecular, Genetic, and Pharmacological Techniques

Laura Duvall, PhD. Credit: The Rockefeller University

Through the use of behavioral, molecular, genetic, and pharmacological techniques, Duvall identified a molecule called NPY-like receptor 7 (NPYLR7) that is activated when a female consumes a blood meal. Activation of this receptor sends a signal that effectively blocks the mosquito’s attraction to find and bite humans. Duvall’s identification and administration of drugs that activate NPYLR7 prevented mosquitoes from consuming blood meals even if they had not previously fed.

Similarly, Duvall also identified the molecular mechanisms that male mosquitoes use during mating to manipulate female breeding behavior. Mosquitos are predominantly monandrous, meaning that females will only mate once with a single male. Duvall discovered that males transmit the molecule, Head peptide I (HP-I), to females during mating. This peptide and its associated receptor that is found in the female results in females refusing to mate with another male. With the use of CRISPR, Duvall created male mosquitoes that fail to produced HP-I. Although these males were able to successfully mate, they failed to ensure paternity since the female would mate with other males.

Understanding the Molecular Mechanisms

Now an Assistant Professor at Columbia University, Duvall is continuing her research on the neurobiology of mosquito behavior, looking for ways to control the world-wide mosquito population and prevent disease spread. To this end, she now plans to test her findings in a new species of mosquito, Ae. Albopictus, which can also carry Zika and dengue but can survive in cooler environments. This mosquito species is prevalent throughout the United States. Duvall wants to understand whether NPYLR7 regulates blood feeding in other mosquito species, especially since there are so many mosquito species that live in different regions. If Duvall finds that activating NPYLR7 in multiple mosquito species prevents blood feeding the impact of her research could ripple throughout the world.

Understanding these molecular mechanisms behind mosquito feeding and breeding offer multiple potential interventions to reduce mosquito populations and stop the spread of disease. Duvall’s search for understanding the neurobiological basis of mosquito feeding and breeding behavior is far from over. Recently, the Beckman Foundation announced Duvall as one of their 2020 Beckman Young Investigators, providing research funding to kick-start her new lab.

So, as you light citronella-scented candles and cover yourself with bug spray this summer, remember that you are not alone in your battle against mosquitoes. Laura Duvall is fighting tirelessly by your side, and a world without mosquito-borne diseases could be a reality.

To learn more about the Blavatnik Awards for Young Scientists, visit blavatnikawards.org.